PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim11g022470.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 304aa    MW: 33230.8 Da    PI: 6.6117
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim11g022470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085.1e-341973155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sopim11g022470.0.1 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-321874IPR009057Homeodomain-like
SuperFamilySSF466897.35E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251974IPR006447Myb domain, plants
PfamPF002491.2E-92172IPR001005SANT/Myb domain
PfamPF143792.8E-23106152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDPANEGNNL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSDGKQSDKK ESGDMLSSLD GSSTGVQINE ALKLQMEVQK  120
RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLSEV PDSGVTPSAA GDNGLDSDNR  180
TDPGTPAPTS ESPHIDTSVQ EHGRSKSLSI DQSFSSQHEP LTPDSGCRET SPINSSEGER  240
SSKKQRVGTF TKADMLLPHQ ILESSLSSRY EQPNPVFVAR EQFNLSSGLS LGNEGPNVRG  300
SNI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144620.0BT014462.1 Lycopersicon esculentum clone 133809F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250431.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_010312875.10.0PREDICTED: myb family transcription factor APL-like
RefseqXP_010312876.10.0PREDICTED: myb family transcription factor APL-like
TrEMBLK4D7950.0K4D795_SOLLC; Uncharacterized protein
STRINGSolyc11g022470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-86G2-like family protein